CluePedia should be downloaded from the Cytoscape App Store via the Cytoscape App Manager (Starting with CluePedia v1.0.6).

DOWNLOADS Cytoscape 3
Release	Date	Required	Cytoscape	ClueGO	Download
1.0.5	21.05.2013	JRE 1.6+	3.0.1	2.0.5
1.0.4	29.04.2013	JRE 1.6+	3.0.1	2.0.4
1.0.3	16.04.2013	JRE 1.6+	3.0.0	2.0.3
1.0.2	27.02.2013	JRE 1.6+	3.0.0	2.0.2
1.0.1	04.02.2013	JRE 1.6+	3.0.0	2.0.1
1.0.0	13.12.2012	JRE 1.6+	3.0.0	2.0.0
1.0.0-beta1	14.11.2012	JRE 1.6+	3.0.0-beta1	2.0.0-beta1

DOWNLOADS Cytoscape 2.8
Release	Date	Required	Cytoscape	ClueGO	Download
1.3	5.01.2013	JRE 1.6+	2.8+	1.8
1.2.1	07.1.2013	JRE 1.6+	2.8+	1.5+
1.2	10.12.2012	JRE 1.6+	2.8+	1.5+
1.1	14.11.2012	JRE 1.6+	2.8+	1.5+
1.0	11.10.2012	JRE 1.6+	2.8+	1.5+